FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3901075
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG378211396.9505328659408No Hit
ATTGGCCG369910.9482258095524951No Hit
ATTGGACC113870.29189390104009794No Hit
ATTGGACA82580.21168524060675584No Hit
ATAGGACG72030.18464141294386802No Hit
ATTGCACG70200.17995039828765147No Hit
AATGGACG64170.16449312048601988No Hit
ATTGGAAG50440.1292976935844607No Hit
ATTCGACG50290.12891318418641018No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)