FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7312309
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA718688798.28478254953394No Hit
CAGGAAGC233760.3196801448078849No Hit
AAGGAAGA155970.21329787895998376No Hit
CAGGAACA113980.15587415684977207No Hit
CAGGAAAA108390.14822951272983678No Hit
CAGCAAGA91870.1256374696419421No Hit
CACGAAGA80330.10985586085051932No Hit
CAGGAATA73780.10089836192644486No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)