FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8947462
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT873390597.61321143358866No Hit
CGCTGCGT320320.35800096161347206No Hit
AGCTGCGA306660.34273406246374666No Hit
AGCTGCGG238180.26619839234857884No Hit
AGCAGCGT198660.22202944253912452No Hit
AGCGGCGT150140.16780177440261831No Hit
AGGTGCGT90180.10078835763705954No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)