FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3869966
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGCA379236397.99473690466532No Hit
GTGGCGCA146810.37935733802312477No Hit
GGGGAGCA76610.1979603955176867No Hit
GAGGAGCA58640.15152587903873058No Hit
GTGGAGAA57020.14733979575014353No Hit
GTGGAGCT55760.14408395319235362No Hit
GTGGAGCC46140.11922585366383064No Hit
GTGCAGCA43900.11343768911664857No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)