FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3980168
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG132450.3327748979440064No Hit
GGACACCTGGCTCCTT120490.30272591508700136No Hit
TCGCGGTGAGTCTTGA107680.2705413439834701No Hit
GTTAAGAGAGTACGTT74980.18838400791122387No Hit
CGCTTACTGATCACAC71740.1802436480068178No Hit
TACCAGTGATACGATC64600.16230470673599706No Hit
ATCTTACTGGTTTGGT62890.15800840567533833No Hit
TTGTGGTGAAAGACAT62070.1559481911316306No Hit
ATAGATGGAGAGTAAT61840.15537032607668824No Hit
ATTCCTAACTGCGTGC59940.15059665823151183No Hit
ATATGCCGAGAACAGC57770.14514462706096828No Hit
TGGAACACTTGAGGCA55730.14001921526930522No Hit
CTTTCTGCTCTTGTGA53650.13479330520721738No Hit
CTTGACGCTCAGGGTA53120.13346170312408925No Hit
AGGTAGCGATTGACCA52300.13140148858038153No Hit
GCGGTTCGAAGCAAGC51640.1297432671183729No Hit
AGCTCTGCTGGCCTGT50110.1258992082746256No Hit
GCTATACGACAGGTGA50080.12582383457180701No Hit
AGTTCACGACCAGAGA46810.1176081009645824No Hit
TGTGACTGACCGTTAA46490.11680411480118427No Hit
ACTGGAACTCTGGAAG46110.11584938123214901No Hit
ACGCTCTTGCCTCAAA45780.11502027050114468No Hit
ACCCTTTCTAGGTGAC43440.10914112168129586No Hit
ACACTCCACCGTACAT42850.10765877219253057No Hit
TTCCAAACTCCGCTAG42800.1075331493544996No Hit
TGTACCCTGCTGAGAG42200.10602567529812812No Hit
TCAGTCCACCCAGCAC41730.10484482062063712No Hit
CACAGCTCTCTCTGGG41340.10386496248399564No Hit
ACATGTGTGTCAATGC40320.10130225658816412No Hit
TCCCAGACTCCTAACA40290.10122688288534555No Hit
GGGAGCTCTTGATGAA40280.10120175831773935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)