FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3952358
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG381859496.6155899845105No Hit
ATTGGCCG452001.1436210991008406No Hit
ATTGGACC128920.3261850267612397No Hit
ATTGGACA84830.21463136689540774No Hit
ATAGGACG76710.19408666927439266No Hit
AATGGACG75560.1911770138231405No Hit
ATTGCACG73810.18674927726688725No Hit
ATTGGAAG57310.14500204687935658No Hit
ATTCGACG53550.13548873862134958No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)