FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4040546
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA162040.40103490963844984No Hit
CATTCAACTAGGCATG144040.3564864748477062No Hit
GTCGACCGATGCTCAA142990.3538878161515795No Hit
ACTGGGCACTTCTCGC114630.283699282225719No Hit
GGGGGGGGGGGGGGGG114590.2836002857039618No Hit
TGTAAGCTGTTGTGAC112240.2777842400507258No Hit
GCTTTAGGAACTAGTC87290.2160351596046673No Hit
TAGTTGCGACATAGCT65620.16240379394269983No Hit
CATCAGTGATTCGCAA63810.15792420133318616No Hit
CAGGAGCCTCGTGCAC53290.13188811611104043No Hit
CAGGAGCCTTCCAATG48400.11978579132622175No Hit
TCCTTAAACAGGGAGG43610.1079309578457961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)