FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3206355
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT90130.28109800692686865No Hit
TCGCGGTGAGTCTTGA87880.27408069287399556No Hit
GGGGGGGGGGGGGGGG79280.2472589591607916No Hit
GTTAAGAGAGTACGTT60230.18784570017979918No Hit
CGCTTACTGATCACAC56250.17543285132182804No Hit
ATCTTACTGGTTTGGT51540.16074327390448032No Hit
TTGTGGTGAAAGACAT51120.15943337528127732No Hit
TACCAGTGATACGATC51050.15921505884407683No Hit
ATAGATGGAGAGTAAT47560.1483304250465092No Hit
ATTCCTAACTGCGTGC47010.14661508161136244No Hit
ATATGCCGAGAACAGC46440.14483736205130124No Hit
TGGAACACTTGAGGCA43320.13510668656465052No Hit
CTTTCTGCTCTTGTGA42770.13339134312950376No Hit
CTTGACGCTCAGGGTA41560.12961758757218086No Hit
AGGTAGCGATTGACCA39880.12437799307936895No Hit
AGCTCTGCTGGCCTGT39750.12397254826742515No Hit
GCTATACGACAGGTGA37630.11736067902649583No Hit
GCGGTTCGAAGCAAGC37200.11601959234083563No Hit
TGTGACTGACCGTTAA36710.11449137728043214No Hit
ACTGGAACTCTGGAAG35910.11199633228385503No Hit
TGTACCCTGCTGAGAG35430.11049930528590876No Hit
AGTTCACGACCAGAGA35310.11012504853642219No Hit
ACGCTCTTGCCTCAAA35000.10915821860024857No Hit
TTCCAAACTCCGCTAG34570.10781713191458837No Hit
ACCCTTTCTAGGTGAC34530.10769237966475952No Hit
ACACTCCACCGTACAT33080.10317011060846351No Hit
TCCCAGACTCCTAACA32870.102515161296862No Hit
ACATGTGTGTCAATGC32650.1018290239228033No Hit
TCAGTCCACCCAGCAC32630.10176664779788888No Hit
GGGAGCTCTTGATGAA32150.10026962079994263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)