FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3527015
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA142830.4049600015877449No Hit
CATTCAACTAGGCATG123820.35106173350552805No Hit
GTCGACCGATGCTCAA123470.35006939295693384No Hit
ACTGGGCACTTCTCGC101080.28658795043400725No Hit
NNNNNNNNNNNNNNNN100750.2856523150596184No Hit
GGGGGGGGGGGGGGGG99040.28080402266505816No Hit
TGTAAGCTGTTGTGAC97710.27703312858040013No Hit
GCTTTAGGAACTAGTC81420.23084676419011543No Hit
TAGTTGCGACATAGCT57110.161921624943472No Hit
CATCAGTGATTCGCAA56490.16016376454310513No Hit
CAGGAGCCTCGTGCAC49340.13989166476468062No Hit
CAGGAGCCTTCCAATG41760.11840040374084035No Hit
TCCTTAAACAGGGAGG38610.10946933880349248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)