FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004947056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31234203
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG3074241698.42548567671152No Hit
TCTATTAA650430.20824286760254457No Hit
ACTATTAG620190.1985611734674325No Hit
TCAATTAG458580.14681981800528093No Hit
TCTAATAG451790.14464591909068403No Hit
TCTTTTAG400980.12837849584316272No Hit
TCTATTTG393020.12583000757214774No Hit
TCTATTAT349060.1117556929498089No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)