FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6291885
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC615381997.80564965825027No Hit
TTTATCCA484090.7693878702487411No Hit
TATATCCC121480.1930740946473116No Hit
TTAATCCC100530.15977723686939604No Hit
ATTATCCC95780.15222782997464196No Hit
TTTAACCC90670.14410625750470646No Hit
TTTATCAC74550.1184859545271409No Hit
TTTATACC66680.10597777931414831No Hit
TTTTTCCC64300.1021951291226715No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)