FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3782771
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG122230.323122917036215No Hit
TCGCGGTGAGTCTTGA103870.2745870685801493No Hit
GGACACCTGGCTCCTT101400.2680574636952647No Hit
GTTAAGAGAGTACGTT74790.1977122062107381No Hit
CGCTTACTGATCACAC71390.1887240861262815No Hit
TACCAGTGATACGATC63100.16680893450859172No Hit
TTGTGGTGAAAGACAT61580.16279071611789347No Hit
ATAGATGGAGAGTAAT60560.1600942800925565No Hit
ATCTTACTGGTTTGGT60200.15914259678949638No Hit
ATTCCTAACTGCGTGC58840.15554734875571374No Hit
ATATGCCGAGAACAGC57780.15274517014114786No Hit
TGGAACACTTGAGGCA53980.14269962416440224No Hit
GCGGTTCGAAGCAAGC51190.13532407856568637No Hit
CTTTCTGCTCTTGTGA50650.1338965536110962No Hit
CTTGACGCTCAGGGTA50460.13339427631225892No Hit
AGCTCTGCTGGCCTGT48790.12897952321195227No Hit
AGGTAGCGATTGACCA47540.12567506729854913No Hit
AGTTCACGACCAGAGA46080.12181546279169424No Hit
TGTGACTGACCGTTAA45910.12136605678747141No Hit
GCTATACGACAGGTGA45240.11959486841788732No Hit
ACTGGAACTCTGGAAG43700.11552377873257462No Hit
ACGCTCTTGCCTCAAA42840.11325031306415323No Hit
TGTACCCTGCTGAGAG42740.11298595659108097No Hit
ACCCTTTCTAGGTGAC42730.11295952094377375No Hit
ACATGTGTGTCAATGC41260.10907348078961164No Hit
TTCCAAACTCCGCTAG41060.10854476784346713No Hit
TCAGTCCACCCAGCAC39980.1056897179342868No Hit
CACAGCTCTCTCTGGG39500.10442080686354No Hit
ACACTCCACCGTACAT39420.10420932168508218No Hit
TCCCAGACTCCTAACA37850.1000589250578478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)