FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3032600
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC296950297.91934313790148No Hit
AGGCTACA152390.5025061003759151No Hit
AGGCAACC67060.22113038316955747No Hit
AGGCTCCC58470.1928048539207281No Hit
CGGCTACC38190.12593154388973157No Hit
AGGATACC32770.10805909120886369No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)