FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences862371
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC83897797.28724644033716No Hit
GGGCCTAC48920.5672732501440795No Hit
GGGACTAA22990.2665905973183236No Hit
GGGACAAC20490.23760075419975857No Hit
CGGACTAC13790.15990797464200443No Hit
GGGACTCC13210.15318233103849735No Hit
GGGAATAC13060.15144294045138346No Hit
GCGACTAC12620.14634072806251602No Hit
GGCACTAC12610.14622476869004175No Hit
TGGACTAC9390.10888585075333006No Hit
GGTACTAC8730.10123253217002891No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)