FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences862371
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA46450.5386312851429373No Hit
GATGAATGACTCCTAC43280.5018721640685969No Hit
CGACCAGACGCGCTGT40300.46731627107126744No Hit
TAGCTTTACCCTATCC39340.45618417131373856No Hit
CCAGGACTGTAACTCG29110.3375577332725706No Hit
ATCTGTACTGGGACTA27970.324338364810505No Hit
CTTCCTTTGGCTCAGC26400.3061327433320462No Hit
GTTCTCGACCGTAGAG25810.29929114035606486No Hit
CGATCAAACCCGGCTA24700.286419650011422No Hit
AGACCATTGAATCCAC23600.2736641190392534No Hit
TGCTGCTACTTTCTTG21290.2468775039976994No Hit
GGGGGGGGGGGGGGGG21260.24652962588027658No Hit
ACAGCCGACTTGCGTA21040.2439785196858429No Hit
GGCAACAGAATAGCAA20420.23678903859243877No Hit
AACTTACCTCACCTAA18510.21464079844985512No Hit
CGCGTTGGAGCGGTTC17950.20814707359129658No Hit
ATCGAAAGATTTCCGC16940.1964351769713963No Hit
CCCTGAACTAGCTTTG16830.19515962387417946No Hit
AGTGGAGTGAGTTGAA16190.18773822403582682No Hit
GTAACTGTGTGAAAGT15810.18333176788180494No Hit
CAATTCGGATAACGGG15200.17625824616087507No Hit
GGGTAGAACCAGTCTA14180.16443039016850056No Hit
TTCCTAAACTAATGCC14100.1635027151887065No Hit
TTTAGTCTGAGCAATA14020.1625750402089124No Hit
AAGAACCCTTAACCCA13850.16060373087685No Hit
CGCGATCGATATCTGG13600.15770474656499348No Hit
GTGAAGCGATCCCAGG13380.15515364037055976No Hit
AGTCCTGCTCGAACGA12710.14738436241478436No Hit
TGGAACACTCCTAGTA12670.14692052492488733No Hit
TGATAGAGAGACTGTT12660.14680456555241306No Hit
TGCAGATACTGCCACG12410.14390558124055655No Hit
CTTTAACTGTCCGTAA12360.14332578437818527No Hit
CATAGGTACAAGGTGC12110.14042680006632877No Hit
GCAACTTGAAGGTGCA11770.13648418140220392No Hit
TGCAGTATGACACCGC11750.1362522626572554No Hit
CACATCCTGAGCCTAT11740.13613630328478116No Hit
TCTCAGAGATGCATGT11540.13381711583529593No Hit
TGGCAATTGAGTGGTG11480.1331213596004504No Hit
TCCGGGAACGTTCTCC11450.13277348148302762No Hit
CTTAGATCTTGTCACA11360.13172984713075928No Hit
TACGTTTACTGCACCG11270.1306862127784909No Hit
AGGTGTGGATCATGTG11220.13010641591611963No Hit
AGAGTACCTTAATCGC11200.1298744971711711No Hit
TCAAAGCACTCTGCAA11150.12929470030879983No Hit
TGAACTGTGAACGTAA11010.12767126909416016No Hit
ATTTCTGACGGGTAGT10910.12651167536941757No Hit
TCTATGGGATGCTCAA10840.12569995976209775No Hit
GGTCTAAACTCCTACC10810.12535208164467498No Hit
TCCATTTGAAATCTGC10720.12430844729240664No Hit
ATGTACGTGTACTTTC10710.12419248791993237No Hit
CATTCTATGCCTAGCG10630.12326481294013829No Hit
CTATTGGGACTTGTGA10630.12326481294013829No Hit
CGAGTCTCTGCTACGC10620.12314885356766404No Hit
GGTCGCATGGTACTAC10370.12024986925580754No Hit
GAGTGTTACACCTGCG10300.11943815364848771No Hit
TTCTTAGACGTCCCGA10300.11943815364848771No Hit
GCATGATACTTGCGTA10010.11607533184673417No Hit
TTGCGGTCTTTTGGGT9960.11549553498436287No Hit
TACTGTTTGCTTAAGC9800.11364018502477471No Hit
GGGTGTGCTCGCAAAG9720.11271251004498063No Hit
GTAATCTCTACACAAA9590.11120503820281527No Hit
GGGATGTGACTGGAAG9580.111089078830341No Hit
CTCAATTTGGAATCTC9550.11074120071291821No Hit
AGACTACTGGCCCTAG9490.11004544447807266No Hit
CTTTCGTCTCGAACGA9350.10842201326343302No Hit
CTACAACGAATCTGTG9310.10795817577353597No Hit
CACATTACTGATGGAC9250.10726241953869042No Hit
TCGGACCGATAGGCGA9240.10714646016621615No Hit
CTAGCTCACGAATAGT9190.10656666330384487No Hit
AGCCAATTGTTATGGC9190.10656666330384487No Hit
CGAGTCTCTTGGAACG9020.10459535397178245No Hit
CACCAGGTGCGCCACA8970.10401555710941116No Hit
ACCTCAGCTAATCCGT8960.10389959773693688No Hit
GCCATTCACCGGAAGT8910.10331980087456558No Hit
TAGTACCGAACGAGCA8840.10250808526724577No Hit
ATGTCCAGACCGCTAG8830.10239212589477152No Hit
TGCTAGTGAAGGCGTA8790.10192828840487446No Hit
ACCAAGTTGAAGCTAA8770.10169636965992594No Hit
CATAGTCGAAGATTCC8740.10134849154250317No Hit
TCATCATTGGACTCGC8730.10123253217002891No Hit
TGAGGGATGTACGTTG8700.10088465405260613No Hit
AGGCGATGACCTGCGA8680.10065273530765761No Hit
TGTAAGCACGCGCTGT8680.10065273530765761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)