FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3412992
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT331369397.09055866524152No Hit
TCATCCTA296930.8699991092859285No Hit
TCCTCCTT174790.5121312912541254No Hit
TCATACTT67600.19806668166816682No Hit
TCATCCAT60120.17615042754275428No Hit
TCAACCTT55860.16366871062106209No Hit
TAATCCTT54700.16026993324332434No Hit
ACATCCTT53380.1564023589858986No Hit
TCATCATT51560.15106979447944796No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)