FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3344037
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG84790.25355580694830826No Hit
GGACACCTGGCTCCTT81080.24246143209539847No Hit
TCGCGGTGAGTCTTGA69230.20702522131184556No Hit
GTTAAGAGAGTACGTT68590.20511136688978024No Hit
ATCTTACTGGTTTGGT57460.17182824233105076No Hit
TACCAGTGATACGATC57290.17131987475018967No Hit
TTGTGGTGAAAGACAT57250.1712002588488106No Hit
CGCTTACTGATCACAC55780.16680437447312932No Hit
ATTCCTAACTGCGTGC54900.16417282464278954No Hit
ATAGATGGAGAGTAAT54300.16237858612210332No Hit
ATATGCCGAGAACAGC50530.15110478741712488No Hit
TGGAACACTTGAGGCA47750.1427914822712787No Hit
GCTATACGACAGGTGA46010.13758819056128863No Hit
CTTTCTGCTCTTGTGA45230.13525568048439657No Hit
CTTGACGCTCAGGGTA43380.12972344504561403No Hit
AGCTCTGCTGGCCTGT42900.12828805422906506No Hit
ACTGGAACTCTGGAAG42780.1279292065249278No Hit
TGTGACTGACCGTTAA40970.12251658698752435No Hit
AGGTAGCGATTGACCA39980.11955609342839209No Hit
TGTACCCTGCTGAGAG39520.11818051056253266No Hit
ACCCTTTCTAGGTGAC37840.11315664270461123No Hit
AGTTCACGACCAGAGA37390.11181096381409655No Hit
TTCCAAACTCCGCTAG36930.11043538094823711No Hit
CACAGCTCTCTCTGGG36040.10777392714255256No Hit
ACATGTGTGTCAATGC35950.10750479136444963No Hit
CAGTGGAGAGATCATC35580.1063983442766931No Hit
TCCCAGACTCCTAACA35370.10577036079445293No Hit
TCAGTCCACCCAGCAC35320.1056208409177291No Hit
ACACTCCACCGTACAT35090.10493304948479935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)