FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004947089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2979596
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT290518097.50248020201397No Hit
GGTAATGA151040.5069143602018529No Hit
GGAAATGT57900.19432164629030246No Hit
GGTAATTT54930.18435385199872736No Hit
GCTAATGT50230.16857990143630208No Hit
GGTAAAGT48780.1637134698798092No Hit
GGTATTGT42100.14129432312300058No Hit
GGTAATCT40260.1351189892857958No Hit
GGTTATGT33860.11363956724334438No Hit
GGTAATGG30620.10276560983435339No Hit
CGTAATGT30450.10219506268635077No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)