FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2972895
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA288175896.93440232500643No Hit
ACCGCGAA206500.6946091267939164No Hit
AACGCCAA93160.3133645823347276No Hit
AACCCGAA73950.24874743305767613No Hit
AACGCAAA71330.23993447464508502No Hit
AACGAGAA60500.2035053373899852No Hit
AACGCGAT48390.16277063266613856No Hit
AAAGCGAA45880.1543276839578929No Hit
AACTCGAA34560.11625032165616343No Hit
AACGCTAA33730.11345843025064795No Hit
CACGCGAA31770.10686553006412941No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)