FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2972895
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA82010.27585905321244103No Hit
GGGGGGGGGGGGGGGG74130.24935290348296865No Hit
GGACACCTGGCTCCTT67140.2258404686341092No Hit
GTTAAGAGAGTACGTT57010.19176593858848026No Hit
CGCTTACTGATCACAC52590.17689827592296398No Hit
TACCAGTGATACGATC49850.16768167056017785No Hit
ATCTTACTGGTTTGGT49480.16643709246374325No Hit
TTGTGGTGAAAGACAT48470.16303973063293523No Hit
ATAGATGGAGAGTAAT46830.1575232223136034No Hit
ATATGCCGAGAACAGC45760.15392403700769788No Hit
ATTCCTAACTGCGTGC45460.15291491963221035No Hit
TGGAACACTTGAGGCA41770.14050277591371374No Hit
CTTTCTGCTCTTGTGA39670.13343895428530103No Hit
CTTGACGCTCAGGGTA38750.13034432766713927No Hit
AGCTCTGCTGGCCTGT37900.12748516176992458No Hit
GCGGTTCGAAGCAAGC37110.12482781934780746No Hit
ACTGGAACTCTGGAAG36330.12220411417153987No Hit
TGTGACTGACCGTTAA35020.11779763496524431No Hit
AGGTAGCGATTGACCA34210.115073018051428No Hit
ACGCTCTTGCCTCAAA34110.11473664559293213No Hit
TGTACCCTGCTGAGAG33970.11426572415103797No Hit
AGTTCACGACCAGAGA33520.11275204808780667No Hit
ACCCTTTCTAGGTGAC32640.10979197045304324No Hit
ACACTCCACCGTACAT32030.1077400984562186No Hit
ACATGTGTGTCAATGC31830.10706735353922692No Hit
TTCCAAACTCCGCTAG31320.10535185400089811No Hit
GCTATACGACAGGTGA31100.10461183459220727No Hit
CAGTGGAGAGATCATC31090.10457819734635766No Hit
TCAGTCCACCCAGCAC30970.10417455039616268No Hit
TCCCAGACTCCTAACA30490.10255996259538262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)