FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2525296
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA98070.38835051415754823No Hit
GTCGACCGATGCTCAA88580.35077076113057637No Hit
CATTCAACTAGGCATG85470.33845537315229585No Hit
GGGGGGGGGGGGGGGG81640.3232888342594294No Hit
NNNNNNNNNNNNNNNN71810.2843627044116808No Hit
ACTGGGCACTTCTCGC67320.2665826105137774No Hit
TGTAAGCTGTTGTGAC66320.26262267868796374No Hit
GCTTTAGGAACTAGTC61780.24464458819876958No Hit
TAGTTGCGACATAGCT39000.15443734120673377No Hit
CATCAGTGATTCGCAA38710.1532889609772478No Hit
CAGGAGCCTCGTGCAC32230.12762860274597512No Hit
CAGGAGCCTTCCAATG28920.11452122840253183No Hit
TCCTTAAACAGGGAGG25660.10161185065037921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)