FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3775303
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC365338496.77061682201402No Hit
GGTCGCGC444811.1782100668476145No Hit
GGTCGAGA91360.2419938214230752No Hit
GGTCGACC78490.20790384242006535No Hit
GGTCCAGC70680.1872167611447346No Hit
GGTAGAGC69520.18414416008463427No Hit
GGACGAGC64630.17119155733990093No Hit
CGTCGAGC48470.12838704601988238No Hit
GCTCGAGC42060.11140827636881066No Hit
GGGCGAGC40940.10844162706940344No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)