FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3627099
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT354674997.78473099300571No Hit
AAGTTGAA146570.40409704835737875No Hit
AAGTTCAT67230.1853547421782532No Hit
AAGTTGCT65940.1817981808602412No Hit
AACTTGAT65510.18061266042090385No Hit
AATTTGAT58620.16161676314873127No Hit
AAGTAGAT58160.16034853198106808No Hit
AAGATGAT55640.1534008308016958No Hit
AAGTTTAT39150.10793750046524786No Hit
ATGTTGAT38790.10694497172533753No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)