FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3581882
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT349744697.6426917469643No Hit
AAGTTGAA155170.43320801746121174No Hit
AAGTTGCT81640.2279248730136839No Hit
AACTTGAT75760.2115089218461133No Hit
AAGTTCAT69200.19319452734623865No Hit
AATTTGAT64290.17948664975563125No Hit
AAGTAGAT60390.1685985188791814No Hit
AAGATGAT56090.15659365663078795No Hit
ATGTTGAT44440.1240688554229313No Hit
AAGTTTAT41160.11491165817299398No Hit
AAGTTGAG37380.10435854670812718No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)