FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3662004
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG358992898.03178805921566No Hit
TTAGATTA110580.30196580888497115No Hit
ATAGATTG79900.2181865448535829No Hit
TTAGAATG72090.19685942451182467No Hit
TTAGATTC59870.16348971765186493No Hit
TTACATTG56170.15338596025564144No Hit
TAAGATTG54060.14762408779455183No Hit
TTAGATTT50450.13776609747012838No Hit
TTAGATAG49220.1344072808221946No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)