FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2772412
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNN78960.28480615435223916No Hit
GGACACCTGGCTCCTT78880.28451759695167966No Hit
TCGCGGTGAGTCTTGA69630.251153147511986No Hit
GGGGGGGGGGGGGGGG68150.24581483560163495No Hit
GTTAAGAGAGTACGTT56400.20343296739445652No Hit
CGCTTACTGATCACAC49080.17702996524326112No Hit
TACCAGTGATACGATC46390.1673272226494475No Hit
ATCTTACTGGTTTGGT46010.16595657499678979No Hit
TTGTGGTGAAAGACAT44800.16159214431332716No Hit
ATTCCTAACTGCGTGC43090.1554242298763676No Hit
ATAGATGGAGAGTAAT42330.1526829345710522No Hit
ATATGCCGAGAACAGC41150.1484267129127994No Hit
TGGAACACTTGAGGCA40090.14460332735538586No Hit
GCTATACGACAGGTGA38210.1378222284422373No Hit
CTTGACGCTCAGGGTA38120.13749760136660785No Hit
CTTTCTGCTCTTGTGA37770.13623516273915998No Hit
AGCTCTGCTGGCCTGT36490.13161824433020777No Hit
AGGTAGCGATTGACCA35650.1285883916243329No Hit
GCGGTTCGAAGCAAGC35470.12793913747307398No Hit
TGTGACTGACCGTTAA34410.12411575191566046No Hit
AGTTCACGACCAGAGA33400.1204727147335966No Hit
TGTACCCTGCTGAGAG33380.12040057538345672No Hit
ACTGGAACTCTGGAAG33070.1192824154562886No Hit
ACCCTTTCTAGGTGAC31490.11358340679523823No Hit
TTCCAAACTCCGCTAG30770.11098639019020262No Hit
TCCCAGACTCCTAACA30330.10939932448712529No Hit
ACATGTGTGTCAATGC30310.10932718513698542No Hit
CACAGCTCTCTCTGGG30230.1090386277364259No Hit
ACACTCCACCGTACAT30160.10878614001093632No Hit
TCAGTCCACCCAGCAC29990.10817295553474736No Hit
GAACTACTGGCCCTGA28160.10157220499694851No Hit
CAGTGGAGAGATCATC27920.10070653279526996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)