FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1488568
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT301572.025906777520409No Hit
GGCTTGCGACGACATT128530.8634472862509472No Hit
AAATAGGTGTTGCGTA124270.8348291781094314No Hit
TATCACTACTGGTCCG106890.7180726711846553No Hit
ATGGGTTACCATGCGC101920.6846848783528867No Hit
GTGTTGTGAGGGTAGT68850.4625250576392882No Hit
CTAATCTTGCCACTTC67400.45278415228595537No Hit
CTGCTTTCTCCACTTC61520.4132831016117503No Hit
AGAGAATTGCCTCCTA56330.3784173783125796No Hit
AGCCGAGCTGCCCTTT44530.2991465623337328No Hit
CTGGCCAGAGGAATGC43030.289069763692354No Hit
AATGGTGCTTCGTACA39760.2671023426541482No Hit
GGGGGGGGGGGGGGGG37330.2507779288551144No Hit
GCTCCTAACCTATCTT35900.24117138081699996No Hit
TCCCTGTGACCCGCAA34950.2347894083441267No Hit
GAGAGAAGACTCACGG31240.2098661263711164No Hit
TGCCGTTACAATCTGC30490.20482772705042698No Hit
GCTGTTCTGATAGGTA29660.19925189846886404No Hit
TTGTCAACTAATACAG28380.19065303029488745No Hit
CTTAATCTGGGAATTA28240.18971252908835876No Hit
TCTTTCCACCGAGTGA26860.18044187433829023No Hit
GTAATCGTGATCCTCC26350.1770157628002214No Hit
TCGTATACTTTCTGGA25910.17405990186541695No Hit
TAGCGCGACAAGACAT25780.17318657931649747No Hit
AGTCCTGCTCCTAGTA25190.16922303851755513No Hit
GGGATGTGAAGGTGCA24830.1668046068436242No Hit
GCAAATCTGGAATTGA24040.16149749289249804No Hit
TGCAATGACACCTTGA22550.1514878729087284No Hit
TTGCGTCACCACTCAA22060.14819611868587798No Hit
GTTGTTGGATTCCATT21480.14429975654454483No Hit
TGTCAATCTGGTGTCC20450.13738035481079802No Hit
CCTTTCTACTCGGGCT19890.13361834998468328No Hit
TACGCCTTGCTGATCA19600.1316701689140167No Hit
GGTTGAACTTCTTTGT19180.12884866529443062No Hit
TACAACCGATCGCTAA19030.12784098543029274No Hit
TTGTTTGTGGCGCTGT18720.12575844704440778No Hit
CAAGTGGGATAGCGAG18410.12367590865852282No Hit
TAAGGGCGATTTCTTG18080.12145901295741948No Hit
CTGCCATTGTCTTTGT17840.11984672517479887No Hit
GCTCCTAACGAATAGT17820.11971236785958048No Hit
CCCACCTCTCATGATC17770.11937647457153452No Hit
TTCCACTCTCGAATCT17640.11850315202261502No Hit
AGAACGCGAGGAGTCA17470.11736111484325876No Hit
AATCCAGACTACCAAC17400.11689086423999442No Hit
CCTTTCTACTCATTTC17240.11581600571824732No Hit
TCTTTCCACTTCGCAA17000.11420371793562673No Hit
CGGAATTTGAGAGGCT15740.10573920707686851No Hit
AGCACATTGCTGGAAG15430.10365666869098356No Hit
TATTGCTTGTTCGTTT15050.10110387970183425No Hit
GTGGTAACTTTTCCGC14960.10049927178335152No Hit
CCAGCTTTGGGAATGC14920.10023055715291476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)