FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3344037
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT320619295.87788651860012No Hit
GCGCCCCT441021.3188251206550645No Hit
GCGCACCA249250.7453565854684023No Hit
GCGCACAT73620.22015306648819974No Hit
GCGCACCG72280.2161459337920005No Hit
CCGCACCT58830.1759250869532843No Hit
GCCCACCT58740.17565595117518137No Hit
GCGAACCT48960.14640986328799593No Hit
GCGCAACT48500.14503428042213648No Hit
GCGCACGT36080.10789354304393164No Hit
GAGCACCT34490.10313881096411313No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)