FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3387441
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG86490.25532548020762574No Hit
GGACACCTGGCTCCTT85920.25364279407375656No Hit
TCGCGGTGAGTCTTGA75630.22326588123601268No Hit
GTTAAGAGAGTACGTT69560.20534674995077407No Hit
CGCTTACTGATCACAC58860.173759483929019No Hit
TACCAGTGATACGATC57820.17068931975494187No Hit
ATCTTACTGGTTTGGT57650.1701874659957177No Hit
TTGTGGTGAAAGACAT57080.16850477986184853No Hit
ATAGATGGAGAGTAAT55120.16271870122608778No Hit
ATTCCTAACTGCGTGC54010.15944189138644776No Hit
ATATGCCGAGAACAGC51930.1533015630382935No Hit
TGGAACACTTGAGGCA49100.14494717398767978No Hit
GCTATACGACAGGTGA46990.13871828321142715No Hit
CTTTCTGCTCTTGTGA45690.13488057799383074No Hit
AGCTCTGCTGGCCTGT45370.1339359120941147No Hit
CTTGACGCTCAGGGTA44170.13039341497017956No Hit
ACTGGAACTCTGGAAG43370.12803175022088945No Hit
AGGTAGCGATTGACCA41340.12203902591956582No Hit
TGTGACTGACCGTTAA40920.12079915192618852No Hit
TGTACCCTGCTGAGAG38960.11501307329042779No Hit
AGTTCACGACCAGAGA38450.11350751201275534No Hit
TTCCAAACTCCGCTAG37970.11209051316318128No Hit
ACCCTTTCTAGGTGAC37850.11173626345078778No Hit
CACAGCTCTCTCTGGG36460.10763287094889623No Hit
TCCCAGACTCCTAACA36440.10757382933016399No Hit
ACATGTGTGTCAATGC36160.10674724666791245No Hit
TCAGTCCACCCAGCAC35540.10491695648721262No Hit
ACACTCCACCGTACAT35430.10459222758418524No Hit
GCGGTTCGAAGCAAGC35080.1035589992563708No Hit
CAGTGGAGAGATCATC34240.10107925126961621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)