FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004947134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18024581
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA1777555698.61841448630622No Hit
ATCCGCCA360100.19978273003960537No Hit
ATCCGGAA264560.14677733701549012No Hit
ATCCCGCA264540.146766241057143No Hit
ATACGGCA238220.1321639598723543No Hit
AACCGGCA192170.10661551577814762No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)