FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3935644
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC383620397.47332329855037No Hit
AGGCTACA198660.504771264880665No Hit
AGGCTCCC108160.2748216047996211No Hit
AGGCAACC107390.2728651270287658No Hit
CGGCTACC66310.1684857675135251No Hit
ACGCTACC60720.15428224707316007No Hit
AGTCTACC49180.12496048931254962No Hit
AGGATACC47740.12130162179302803No Hit
AGCCTACC42560.10813986224363788No Hit
AGGCTAAC39670.10079671840237583No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)