FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3443772
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATTGGTG339677998.63542069567904No Hit
TATTGGTA78660.22841233391757643No Hit
TATTGGGG42210.1225690899397521No Hit
TAATGGTG40680.11812628710611504No Hit
TTTTGGTG34850.1011971756550666RNA PCR Primer, Index 28 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)