FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5456774
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC531791497.45527302395152No Hit
TTTATCCA423500.7760995782489801No Hit
TTTAACCC142660.26143651908618537No Hit
ATTATCCC133050.24382538107680474No Hit
TTTATACC123310.22597600706937837No Hit
TATATCCC106000.19425396763728897No Hit
TTAATCCC83520.1530574658213809No Hit
TTTTTCCC63360.11611256027828896No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)