FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5456774
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG160420.29398322158843304No Hit
ACTGTCCACAGGTCCC98340.18021636959859436No Hit
CTGGTGGACGCGGTTC94390.1729776604272048No Hit
GTGGTTAACGGCCTGT81460.14928234154465625No Hit
AAGACAAACAGTACGG69220.12685150603635043No Hit
GTGTACTGACAGTCCG65330.11972275194098198No Hit
AGCTATCGACGGTTTA58070.10641818774242803No Hit
GGGTGAATGGACAAAT57020.10449397391205867No Hit
TGTCCCATGGCCAGCT56240.10306455792378427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)