FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1451630
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACGGG141498597.47559639853131No Hit
GGTACGGA104090.7170559991182326No Hit
GGTCCGGG51910.35759801051232065No Hit
GGAACGGG30430.20962641995549827No Hit
GGTAGGGG19880.13694949815035512No Hit
GGTAAGGG16810.11580085834544615No Hit
CGTACGGG15950.10987648367697003No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)