FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7051561
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC688224597.5988862607868No Hit
CAACCATA375210.5320949503237652No Hit
CCACCATC211370.29974923282944016No Hit
AAACCATC199610.2830720743960096No Hit
CAACCAAC189370.26855046705261426No Hit
CACCCATC95250.13507647455648472No Hit
CAACCCTC94330.13377179889672655No Hit
CAACAATC93410.13246712323696838RNA PCR Primer, Index 36 (100% over 8bp)
CAAACATC91730.1300846720321926No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)