FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4068344
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC397076697.60153025407881No Hit
TAAGCCCC168660.41456671313930193No Hit
AAAGCCAC156160.3838416810377884No Hit
TAACCCAC113930.280040232586035No Hit
TAAACCAC104230.25619760767526045No Hit
TAAGCCAA89050.21888512869118246No Hit
TAAGCAAC56790.13958996584359631No Hit
TAATCCAC49250.12105662647996336No Hit
TAAGACAC41260.10141718596067589No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)