FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14842145
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGCTC1462014798.50427279884411No Hit
GGAAGCTA463730.31244136208075046No Hit
GGCAGCTC299430.20174307689353527No Hit
GGAAGCAC215700.14532939814292342No Hit
GGAACCTC148630.10014051203515394No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)