FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8248855
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC805873997.69524376413455No Hit
TTTATCCA618280.7495343293099467No Hit
GTTATCCC206110.24986498126103562No Hit
ATTATCCC195620.23714806479202266No Hit
TTTAACCC139750.16941745248279913No Hit
TTTATACC126300.15311215920270146No Hit
TATATCCC115010.13942541116312507No Hit
TTAATCCC90450.10965158194682777No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)