FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3183566
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG309906597.34571232385318No Hit
CTATTTGA225970.7098015244540242No Hit
CTAATTGG59310.18630051960600158No Hit
CTATATGG57060.17923297333870256No Hit
CTATTTGC55600.17464692109414412No Hit
CTATTTTG54180.17018651411655986No Hit
CAATTTGG49220.15460650101175852No Hit
CGATTTGG48110.15111984485322433No Hit
ATATTTGG41230.12950885893366118No Hit
CTTTTTGG38860.12206437686543958No Hit
CTATTTCG38370.12052522234500557No Hit
CTATTAGG38160.11986558469339101No Hit
CTATTTGT32090.10079891543005547No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)