FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3183566
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT90860.2854032239319053No Hit
TCGCGGTGAGTCTTGA86370.2712995427140508No Hit
GGGGGGGGGGGGGGGG79210.24880903992566825No Hit
GTTAAGAGAGTACGTT59040.18545241405392568No Hit
CGCTTACTGATCACAC54370.17078332913468733No Hit
TACCAGTGATACGATC50210.15771622136937008No Hit
ATCTTACTGGTTTGGT50100.157370696885191No Hit
TTGTGGTGAAAGACAT49360.15504625944616823No Hit
ATAGATGGAGAGTAAT47150.14810435844584344No Hit
ATTCCTAACTGCGTGC47000.14763318869469017No Hit
ATATGCCGAGAACAGC45240.14210479694782518No Hit
TGGAACACTTGAGGCA43300.13601100149957626No Hit
GCGGTTCGAAGCAAGC43280.13594817886608918No Hit
GCTATACGACAGGTGA42360.13305833772568246No Hit
CTTGACGCTCAGGGTA40250.12643054989279318No Hit
CTTTCTGCTCTTGTGA39950.12548821039048663No Hit
AGGTAGCGATTGACCA38960.12237849003287508No Hit
AGCTCTGCTGGCCTGT38620.12131050526359435No Hit
TGTGACTGACCGTTAA36410.11436860426326954No Hit
ACTGGAACTCTGGAAG35800.11245251394191294No Hit
ACGCTCTTGCCTCAAA35540.11163581970658062No Hit
AGTTCACGACCAGAGA34800.10931138226755782No Hit
TGTACCCTGCTGAGAG33960.10667283166109953No Hit
TTCCAAACTCCGCTAG33120.10403428105464124No Hit
ACCCTTTCTAGGTGAC33100.10397145842115413No Hit
ACACTCCACCGTACAT32860.10321758681930893No Hit
ACATGTGTGTCAATGC32000.10051621357936352No Hit
TCAGTCCACCCAGCAC31860.10007645514495381No Hit
TCCCAGACTCCTAACA31850.10004504382821026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)