FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences796956
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC50140.6291438925110044No Hit
CTCCTAGTGAACGTAA42240.5300167135952298No Hit
CGACCAGACGCGCTGT41710.5233664091869564No Hit
TAGCTTTACCCTATCC36460.4574907523125492No Hit
CCAGGACTGTAACTCG29370.36852724617168325No Hit
GTTCTCGACCGTAGAG25670.32210059275543446No Hit
ATCTGTACTGGGACTA25530.3203439085721169No Hit
CTTCCTTTGGCTCAGC24850.31181144253886034No Hit
GGGGGGGGGGGGGGGG24310.30503566068892135No Hit
CGATCAAACCCGGCTA24000.30114585999728966No Hit
AGACCATTGAATCCAC23930.3002675179056309No Hit
TGCTGCTACTTTCTTG20490.25710327797268606No Hit
ACAGCCGACTTGCGTA19600.24593578566445323No Hit
AACTTACCTCACCTAA16960.21280974106475137No Hit
GGCAACAGAATAGCAA16810.21092757943976834No Hit
CGCGTTGGAGCGGTTC16730.20992375990644402No Hit
ATCGAAAGATTTCCGC16370.20540657200648466No Hit
CCCTGAACTAGCTTTG15820.19850531271488012No Hit
GTAACTGTGTGAAAGT15320.19223144063160325No Hit
AGTGGAGTGAGTTGAA14860.18645947831498852No Hit
CAATTCGGATAACGGG14740.18495374901500208No Hit
GGGTAGAACCAGTCTA14510.1820677678566947No Hit
AAGAACCCTTAACCCA14030.17604485065674894No Hit
CGCGATCGATATCTGG13160.16512831323184718No Hit
GTGAAGCGATCCCAGG13080.1641244936985229No Hit
TTCCTAAACTAATGCC12990.16299519672353305No Hit
TTTAGTCTGAGCAATA12460.15634489231525955No Hit
TGATAGAGAGACTGTT12460.15634489231525955No Hit
TGGAACACTCCTAGTA12300.15433725324861094No Hit
TGCAGATACTGCCACG12130.15220413674029684No Hit
AGTCCTGCTCGAACGA12030.15094936232364145No Hit
TCCGGGAACGTTCTCC11850.1486907683736618No Hit
TACGTTTACTGCACCG11720.14705956163200978No Hit
TCTCAGAGATGCATGT11350.1424168962903849No Hit
CTTTAACTGTCCGTAA11290.1416640316403917No Hit
ATTTCTGACGGGTAGT11220.14078568954873294No Hit
GCAACTTGAAGGTGCA10870.13639397909043913No Hit
CTTAGATCTTGTCACA10820.13576659188211143No Hit
CACATCCTGAGCCTAT10780.1352646821154493No Hit
AGGTGTGGATCATGTG10750.13488824979045266No Hit
TGCAGTATGACACCGC10620.1332570430488007No Hit
TGGCAATTGAGTGGTG10560.13250417839880746No Hit
CGAGTCTCTGCTACGC10550.13237870095714194No Hit
CATAGGTACAAGGTGC10530.13212774607381086No Hit
GAGTGTTACACCTGCG10450.13112392654048655No Hit
CTATTGGGACTTGTGA10200.12798699049884812No Hit
TGAACTGTGAACGTAA10190.12786151305718257No Hit
AGAGTACCTTAATCGC10140.12723412584885488No Hit
TCAAAGCACTCTGCAA10140.12723412584885488No Hit
GGTCTAAACTCCTACC10120.1269831709655238No Hit
TTCTTAGACGTCCCGA10070.1263557837571961No Hit
ATGTACGTGTACTTTC10010.12560291910720292No Hit
TGAGGGATGTACGTTG9960.12497553189887523No Hit
GGTCGCATGGTACTAC9900.124222667248882No Hit
TCTATGGGATGCTCAA9900.124222667248882No Hit
TCCGGGTGAACACCTA9830.12334432515722323No Hit
GGGTGTGCTCGCAAAG9780.12271693794889554No Hit
TTGCGGTCTTTTGGGT9540.11970547934892264No Hit
CTACAACGAATCTGTG9360.11744688539894299No Hit
CACCAGGTGCGCCACA9280.11644306586561869No Hit
ATGTCCAGACCGCTAG9280.11644306586561869No Hit
CTCAATTTGGAATCTC9250.11606663354062206No Hit
TACTGTTTGCTTAAGC9170.11506281400729776No Hit
CTTTCGTCTCGAACGA9120.11443542679897008No Hit
AGGCGATGACCTGCGA9070.11380803959064241No Hit
TCGGACCGATAGGCGA9060.11368256214897687No Hit
GGGATGTGACTGGAAG9020.11318065238231471No Hit
TCCATTTGAAATCTGC9010.11305517494064918No Hit
CGAGTCTCTTGGAACG8930.11205135540732487No Hit
CATTCTATGCCTAGCG8910.1118004005239938No Hit
CTAGCTCACGAATAGT8900.11167492308232826No Hit
AGCCAATTGTTATGGC8870.11129849075733164No Hit
GTAATCTCTACACAAA8710.10929085169068306No Hit
CACATTACTGATGGAC8710.10929085169068306No Hit
TAGTACCGAACGAGCA8650.10853798704068983No Hit
AGACTACTGGCCCTAG8580.10765964494903106No Hit
CTAACAGTGCATGATC8560.10740869006569999No Hit
ACCTCAGCTAATCCGT8540.10715773518236892No Hit
GGGCCTTGACTATCTT8530.10703225774070337No Hit
TTTAGGGACCACAGTT8500.10665582541570676No Hit
ACCAAGTTGAAGCTAA8490.10653034797404122No Hit
TGCGCAGACATCAGGG8480.10640487053237568No Hit
TGCTAGTGAAGGCGTA8310.10427175402406155No Hit
GCATGATACTTGCGTA8290.10402079914073048No Hit
TGTAAGCACGCGCTGT8220.10314245704907171No Hit
ATAGCCAACCGTTCTC8210.10301697960740618No Hit
TACTGGCCTCCTGTGG8200.10289150216574064No Hit
ACGAGGATGAACTAGA8100.10163672774908528No Hit
CATAGTCGAAGATTCC8090.10151125030741974No Hit
GTCTAATCTAAGTTCC8040.10088386309909204No Hit
TCATCATTGGACTCGC8020.10063290821576097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)