FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences693009
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA26840.38729655747616554No Hit
GTCGACCGATGCTCAA25710.3709908529326459No Hit
CATTCAACTAGGCATG23890.3447285677386585No Hit
GGGGGGGGGGGGGGGG22660.3269798804921726No Hit
ACTGGGCACTTCTCGC18800.27128074815767184No Hit
TGTAAGCTGTTGTGAC18240.2632000450210603No Hit
GCTTTAGGAACTAGTC17120.24703863874783732No Hit
CATCAGTGATTCGCAA10770.15540923710947477No Hit
TAGTTGCGACATAGCT10760.15526493883917813No Hit
CAGGAGCCTCGTGCAC9040.1304456363481571No Hit
CAGGAGCCTTCCAATG8260.11919037126501965No Hit
TCCTTAAACAGGGAGG7150.10317326326209326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)