FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1051580
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG101379596.40683542859317No Hit
ATTGGCCG134981.2835923087164076No Hit
ATTGGACC36420.346335989653664No Hit
ATAGGACG23730.22566043477433956No Hit
ATTGGACA22440.21339317978660682No Hit
AATGGACG20000.19018999980981No Hit
ATTGCACG19680.18714695981285304No Hit
ATTGGAAG15660.1489187698510812No Hit
ATTCGACG13570.1290439148709561No Hit
ATTGAACG13100.12457444987542556No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)