FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1105580
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA43930.3973479983357152No Hit
CATTCAACTAGGCATG39520.35745943305776157No Hit
GTCGACCGATGCTCAA37770.34163063731254184No Hit
GGGGGGGGGGGGGGGG32680.29559145425930283No Hit
ACTGGGCACTTCTCGC31370.2837424700157383No Hit
TGTAAGCTGTTGTGAC29980.27116988368096384No Hit
GCTTTAGGAACTAGTC24840.22467844932071857No Hit
TAGTTGCGACATAGCT17620.1593733605890121No Hit
CATCAGTGATTCGCAA17100.1546699469961468No Hit
CAGGAGCCTCGTGCAC15470.13992655438774218No Hit
CAGGAGCCTTCCAATG13030.11785669060583585No Hit
TCCTTAAACAGGGAGG11870.10736446028329022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)