FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4586510
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA197150.4298475311293336No Hit
CATTCAACTAGGCATG170810.37241824393711126No Hit
GTCGACCGATGCTCAA139490.3041310277313251No Hit
ACTGGGCACTTCTCGC138720.30245219131758133No Hit
TGTAAGCTGTTGTGAC133850.2918340960774096No Hit
GGGGGGGGGGGGGGGG133550.2911800039681588No Hit
GCTTTAGGAACTAGTC87470.1907114559872321No Hit
TAGTTGCGACATAGCT78490.1711322988503241No Hit
CATCAGTGATTCGCAA74830.16315237511746405No Hit
CAGGAGCCTCGTGCAC63400.1382314657550076No Hit
CAGGAGCCTTCCAATG58460.12746074902267737No Hit
TCCTTAAACAGGGAGG52960.11546906035307893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)