FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences936853
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT91783497.96990563087272No Hit
TCATCCTA70620.753800222660332No Hit
TCCTCCTT24960.26642386799209694No Hit
ACATCCTT13300.1419646411977119No Hit
TAATCCTT13170.14057701688525306No Hit
TCAACCTT10920.11656044224654241No Hit
TCATCCAT10810.11538629859753878No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)