FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004947216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17639304
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGG1734643698.3396850578685No Hit
ATCCAAGA528010.29933720740909053No Hit
AACCAAGG341180.19342032996313233No Hit
ATCCAACG282640.16023307949111823No Hit
ATCCAAGC243800.13821407012430878No Hit
ATACAAGG225230.12768644386422504No Hit
ATCAAAGG178110.10097337173847676No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)