FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5690829
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA557839498.02427730652248No Hit
CAGGAAGC374680.6583926524588948No Hit
CAGGAATA146020.2565882756273295No Hit
CAGGAAAA88730.15591752976587417No Hit
CACGAAGA73430.12903216736963982No Hit
CAGGAACA73100.12845228700423084No Hit
AAGGAAGA67700.11896333557026577No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)