FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7005357
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC682269297.39249548595453No Hit
CAACCATA371590.5304369213446224No Hit
CCACCATC269770.38509100963733894No Hit
AAACCATC232490.3318745925439631No Hit
CAACCAAC167540.23915983154034834No Hit
CACCCATC115840.1653591672772708No Hit
CAACCCTC114710.1637461160080778No Hit
CAACAATC101380.1447178209475977RNA PCR Primer, Index 36 (100% over 8bp)
CAAACATC91370.1304287561647465No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)